Interaction of He2+ ions with heterocyclic cyclodialanine molecules
Basalaev A. A.1, Kuz’michev V. V.1, Panov M. N.1, Petrov A. V.2, Simon K. V1, Smirnov O. V.1
1Ioffe Institute, St. Petersburg, Russia
2Saint Petersburg State University, St. Petersburg, Russia
Email: a.basalaev@mail.ioffe.ru

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Mass spectrometric analysis of alpha-particle-induced fragmentation of heterocyclic molecules of the dipeptide cyclo(Ala-ala) (C6H10N2O2, 3,6-Dimethylpiperazine-2,5-dione) has been performed. Relative cross sections of various elementary processes occurring during single collisions of cyclo(Ala-ala) with ions have been measured for the first time. The geometry of molecules and singly charged ions, as well as reaction pathways of various experimentally observed fragmentation channels of these ions, have been calculated using the multiconfigurational self-consistent field method in the complete active space (CASSCF). The optimized geometry of molecules and singly charged ions, as well as their total energy, have been calculated using the density functional theory (DFT). Keywords: electron capture, dipeptides, molecular ion fragmentation, mass spectrometry, DFT, CASSCF metho.
  1. M.S. de Vries, P. Hobza. Annu. Rev. Phys. Chem., 58, 585 (2007). DOI: 10.1146/annurev.physchem.57.032905.104722
  2. NIST Mass Spectrometry Data Center, W.E. Wallace, director, "Mass Spectra" in NIST Chemistry WebBook, NIST Standard Reference Database Number 69, Eds. P.J. Linstrom, W.G. Mallard (National Institute of Standards and Technology, Gaithersburg MD, 20899), DOI: 10.18434/T4D303
  3. H.J. Svek, G.A. Junk. J. Am. Chem. Soc., 86, 2278 (1964)
  4. A.A. Basalaev, V.V. Kuz?michev, M.N. Panov, A.V. Petrov, O.V. Smirnov. Rad. Phys. Chem., 193, 109984 (2022). DOI: 10.1016/j.radphyschem.2022.109984
  5. A.P. Wickrama Arachchilage, F. Wang, V. Feyer, O. Plekan, K.C. Prince. J. Chem. Phys., 133, 174319 (2010). DOI: 10.1063/1.3499740
  6. A.P. Wickrama Arachchilage, F. Wang, V. Feyer, O. Plekan, K.C. Prince. J. Chem. Phys., 136, 124301 (2012). DOI: 10.1063/1.3693763
  7. D. Barreiro-Lage, P. Bolognesi, J. Chiarinelli, R. Richter, H. Zettergren, M.H. Stockett, L. Carlini, S. Diaz-Tendero, L. Avaldi. J. Phys. Chem. Lett., 12, 7379 (2021). DOI: 10.1021/acs.jpclett.1c01788
  8. J. Chiarinelli, D. Barreiro-Lage, P. Bolognesi, R. Richter, H. Zettergren, M.H. Stockett, S. Di az-Tendero, L. Avaldi. Phys. Chem. Chem. Phys., 24, 5855 (2022). DOI: 10.1039/D1CP05811H
  9. D. Barreiro-Lage, J. Chiarinelli, P. Bolognesi, R. Richter, H. Zettergren, M.H. Stockett, S. Di az-Tendero, L. Avaldi. Phys. Chem. Chem. Phys., 25, 15635 (2023). DOI: 10.1039/D3CP00608E
  10. V.V. Afrosimov, A.A. Basalaev, O.S. Vasyutinskii, M.N. Panov, O.V. Smirnov. Eur. Phys. J. D, 69, 3 (2015). DOI: 10.1140/epjd/e2014-50435-5
  11. O.V. Smirnov, A.A. Basalaev, V.M. Boitsov, S.Yu. Vyaz'min, A.L. Orbeli, M.V. Dubina. Tech. Phys., 59 (11), 1698 (2014). DOI: 10.1134/S1063784214110231
  12. A.A. Basalaev, A.G. Buzykin, V.V. Kuz?michev, M.N. Panov, O.V. Smirnov. J. Phys. Conf. Ser., 1400, 033017 (2019). DOI: 10.1088/1742-6596/1400/3/033017
  13. A.A. Basalaev, V.V. Kuz'michev, M.N. Panov, A.V. Petrov, O.V. Smirnov. ZhTF, 92 (7), 978 (2022). (in Russian) DOI: 10.21883/JTF.2022.07.52654.309-21
  14. Electronic source. Available at: http://www.vekton.ru
  15. B. Delley. J. Chem. Phys., 92, 508 (1990). DOI: 10.1063/1.458452
  16. B. Delley. J. Chem. Phys., 113, 7756 (2000). DOI: 10.1063/1.1316015
  17. G.M.J. Barca, C. Bertoni, L. Carrington, D. Datta, N. De Silva, J.E. Deustua, D.G. Fedorov, J.R. Gour, A.O. Gunina, E. Guidez, T. Harville, S. Irle, J. Ivanic, K. Kowalski, S.S. Leang, H. Li, W. Li, J.J. Lutz, I. Magoulas, J. Mato, V. Mironov, H. Nakata, B.Q. Pham, P. Piecuch, D. Poole, S.R. Pruitt, A.P. Rendell, L.B. Roskop, K. Ruedenberg, T. Sattasathuchana, M.W. Schmidt, J. Shen, L. Slipchenko, M. Sosonkina, V. Sundriyal, A. Tiwari, J.L. Galvez Vallejo, B. Westheimer, M. W?och, P. Xu, F. Zahariev, M.S. Gordon. J. Chem. Phys., 152 (15), 154102 (2020). DOI: 10.1063/5.0005188
  18. J. Renoud, S. Indrajith, A. Domaracka, P. Rousseau, P. Moretto-Capelle, B.A. Huber, J.-Ph. Champeaux. Phys. Chem. Chem. Phys., 22, 5785 (2020). DOI: 10.1039/C9CP06230K
  19. A.P. Mendham, T.J. Dines, M.J. Snowden, B.Z. Chowdhry, R. Withnall. J. Raman. Spectros., 40, 1478 (2009). DOI: 10.1002/jrs.2293
  20. Electronic source. NIST Mass Spectral Search Program. Available at: http://chemdata.nist.gov
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