Additional iron ions binding sites in hemoglobin: XANES modeling
Pronina E. V.1, Kremennaya M. A. 1, Lysenko V. Y. 1, Yalovega G. E. 1
1Faculty of Physics, Southern Federal University, Rostov-on-Don, Russia
Email: epronina@sfedu.ru, kremennaya@sfedu.ru, vlysenko@sfedu.ru, yalovega@sfedu.ru

PDF
The contributions of additional Fe-binding sites and heme iron to the experimental spectrum of urea-influenced hemoglobin were evaluated based on theoretical analysis of X-ray absorption spectra. The theoretical Fe K-edge X-ray absorption spectra were calculated for structural models of the supposed additional Fe binding sites and heme. Linear combination fit of theoretical spectra showed that in treated hemoglobin iron ions are more likely to be in the additional Fe-binding sites, which is surrounded by the following amino acids: cysteine-93, histidine-146, and asparagine-94 (Cys 93, His 146, Asp 94). Keywords: hemoglobin, XANES, additional iron-binding sites, endogenous toxicants.
  1. S. Reeg, T. Grune. Antioxid. Redox Signal., 23 (3), 239 (2015). DOI: 10.1089/ars.2014.6062
  2. J.S. Cristovao, B.J. Henriques, C.M. Gomes. Protein Misfolding Diseases. Methods in Molecular Biology (Humana New York, N.Y., 2019), 1873, p. 3-18. DOI: 10.1007/978-1-4939-8820-4
  3. D. Motz, S. Praetz, C. Schlesiger, J. Henniges, F. Bottcher, B. Hesse, H. Castillo-Michel, S. Mijatz, W. Malzer, B. Kanngieb er, C. Vogt. J. Anal. At. Spectrom., 38 (2), 391 (2023). DOI: 10.1039/D2JA00351A
  4. G.E. Yalovega, M.A. Kremennaya. Crystallogr. Rep., 65 (6), 813 (2020). DOI:10.1134/S1063774520060395
  5. N.N. Novikova, M.V. Kovalchuk, E.A. Yurieva, O.V. Konovalov, N.D. Stepina, A.V. Rogachev, G.E. Yalovega, O.V. Kosmachevskaya, A.F. Topunov, S.N. Yakunin. J. Phys. Chem. B, 123 (40), 8370 (2019). DOI: 10.1021/acs.jpcb.9b06571
  6. O.V. Konovalov, N.N. Novikova, M.V. Kovalchuk, G.E. Yalovega, A.F. Topunov, O.V. Kosmachevskaya, E.A. Yurieva, A.V. Rogachev, A.L. Trigub, M.A. Kremennaya, V.I. Borshchevskiy, D.D. Vakhrameev, S.N. Yakunin. Materials, 13 (20), 4635 (2020). DOI: 10.3390/ma13204635
  7. PDB-Protein Data Bank. http://www.rcsb.org/
  8. Y. Joly. Phys. Rev. B, 63 (12), 125120 (2001). DOI: 10.1103/PhysRevB.63.125120
  9. N.N. Novikova, S.N. Yakunin, M.V. Kovalchuk, E.A. Yuryeva, N.D. Stepina, A.V. Rogachev, M.A. Kremennaya, G O.E. Yalovega, O.V. Kosmachevskaya, A.F. Topunov. Crystallografiya, 64 (6), 931 (2019) (in Russian). DOI: 10.1134/S0023476119060134
  10. K.B. Shumaev, O.V. Kosmachevskaya, A.A. Timoshin, A.F. Vanin, A.F. Topunov. Methods in Enzymology. Globins and Other Nitric Oxide-Reactive Proteins, Part A (Academic Press, 2008), 436, p. 445-461 DOI: 10.1016/S0076-6879(08)36025-X
  11. M. Padjasek, A. Kocy a, K. Kluska, O. Kerber, J.B. Tran, A. Kr ezel. J. Inorg. Biochem., 204, 110955 (2020). DOI: 10.1016/j.jinorgbio.2019.110955
  12. S.M. Ireland, A.C. Martin. Database, 2019, baz006 (2019). DOI: 10.1093/database/baz006

Подсчитывается количество просмотров абстрактов ("html" на диаграммах) и полных версий статей ("pdf"). Просмотры с одинаковых IP-адресов засчитываются, если происходят с интервалом не менее 2-х часов.

Дата начала обработки статистических данных - 27 января 2016 г.

Publisher:

Ioffe Institute

Institute Officers:

Director: Sergei V. Ivanov

Contact us:

26 Polytekhnicheskaya, Saint Petersburg 194021, Russian Federation
Fax: +7 (812) 297 1017
Phone: +7 (812) 297 2245
E-mail: post@mail.ioffe.ru